Introduction:

This tool performs a Kruskal-Wallis rank sum test and multiple comparison corrections to find the significant peaks on the inputted peak table. Group information is given by a group design file (Tab-delimited text file).

Input files:

1.      Peak table file in Tab-delimited txt format, with the first column as the compound identifier and others as samples.

For example:

HU_011

HU_014

HU_015

HU_017

HU_018

HU_019

(2-methoxyethoxy)propanoic acid isomer

3.019766

3.814339

3.519691

2.562183

3.781922

4.161074

(gamma)Glu-Leu/Ile

3.888479

4.277149

4.195649

4.32376

4.629329

4.412266

1-Methyluric acid

3.869006

3.837704

4.102254

4.53852

4.178829

4.516805

1-Methylxanthine

3.717259

3.776851

4.291665

4.432216

4.11736

4.562052

1,3-Dimethyluric acid

3.535461

3.932581

3.955376

4.228491

4.005545

4.320582

1,7-Dimethyluric acid

3.325199

4.025125

3.972904

4.109927

4.024092

4.326856

2-acetamido-4-methylphenyl acetate

4.204754

5.181858

3.88568

4.237915

1.852994

4.080681

2-Aminoadipic acid

4.080204

4.359246

4.249111

4.231404

4.323679

4.244485

Output files:

1.      'kw_test_results.txt ', Kruskal-Wallis rank sum test results with pvalue and qvalue.

2.      'kw_test_significant_results.txt ', significant Kruskal-Wallis rank sum test results.

Note:

Group names of characters or string are preferred. Numbers are also supported but not recommended.