Introduction:
This tool takes a peak table file as input and
outputs the basic statistics, including 'nbr.val', 'nbr.null',
'nbr.na', 'min', 'max', 'range', 'sum', 'median', 'mean', 'SE.mean',
'CI.mean.0.95' ,'var',
'std.dev', 'coef.var', 'skewness', 'skew.2SE',
'kurtosis', 'kurt.2SE', 'normtest.W', and 'normtest.p'.
Input files:
1.
Peak table file in Tab-delimited
txt format, with the first column as the compound identifier and others as
samples.
For example:
|
STDmix_GC_01 |
STDmix_GC_02 |
STDmix_GC_03 |
|
|
(2-methoxyethoxy)propanoic
acid isomer |
3.019766011 |
3.81433889 |
3.51969148 |
|
(gamma)Glu-Leu/Ile |
3.888479324 |
4.277148905 |
4.195649235 |
|
1-Methyluric
acid |
3.869005757 |
3.837704025 |
4.102253758 |
|
1-Methylxanthine |
3.717258956 |
3.776851289 |
4.291665208 |
|
1,3-Dimethyluric
acid |
3.535461262 |
3.932581047 |
3.955376494 |
Output files:
1.
'pkTable_summary.txt', basic
statistics summary information on rows (compouds data).